PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223383.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 390aa    MW: 42898.1 Da    PI: 6.1835
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223383.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.2e-33206264159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+s++prsYYrCt+a C vkk+vers++dp++v++tYeg+H+h+
  XP_008223383.1 206 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAACGVKKRVERSSDDPSTVVTTYEGQHTHP 264
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-35191266IPR003657WRKY domain
SuperFamilySSF1182902.09E-29198266IPR003657WRKY domain
PROSITE profilePS5081132.512201266IPR003657WRKY domain
SMARTSM007741.0E-39206265IPR003657WRKY domain
PfamPF031067.4E-27207264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDGRETGELK TTIDQISMAN STVFSDEIIP GSSFASFASS GGNIFDMSDN NQRGSGFMDL  60
LGFQDFNMPP SLFDFSSSQT TSSSSSMMMV MMPPHHQQQQ QPPLASPAST PTAVALPERE  120
STTSEVLNGS TAPTTPNSSS ISSSSNEAAA NKNEDQTTTK AQDEEADEQN QDPEKTQKQL  180
KPKKKNQKRQ REPRFAFMTK SEVDNLDDGY RWRKYGQKAV KNSPYPRSYY RCTTAACGVK  240
KRVERSSDDP STVVTTYEGQ HTHPSPITPR GTMGIAPLPD QPCAFPSSPF GVQQLLPHHH  300
YQQQQQQQQQ PQYSYIYSSA PSLNISSPAY GGGAFNPSSF STGLLQERYN FGSPSSSSSA  360
ASNLLRDHGL LQDIVPQIRK EAKEEDHLHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-271992661077Probable WRKY transcription factor 4
2lex_A2e-271992661077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223383.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223383.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotQ9FGZ41e-55WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLM5XRR00.0M5XRR0_PRUPE; Uncharacterized protein
STRINGXP_008223383.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.16e-49WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]