PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223250.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 323aa    MW: 35823.9 Da    PI: 8.5702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223250.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-20143192255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a++ a+++++g
  XP_008223250.2 143 VYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDDAARRIRG 192
                     69*******.**********72....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-13143192IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22143200IPR016177DNA-binding domain
SMARTSM003806.9E-40143206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-33143201IPR001471AP2/ERF domain
PROSITE profilePS5103224.092143200IPR001471AP2/ERF domain
CDDcd000182.21E-22144202No hitNo description
PRINTSPR003671.9E-11144155IPR001471AP2/ERF domain
PRINTSPR003671.9E-11166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MESRRATTLF VCVLCHAKPL FCVEVTPPAS GNINNMCGGA IISDFISAKR GRTLTAEDLW  60
TEFDTISDLL GLDHSSSSNN NNNKDQFEHQ QNNKRVAQKP KIPLSKGAGT SEKPKRTSPG  120
AGAQKEEEVG KASDKNKRVR KNVYRGIRQR PWGKWAAEIR DPHKGVRVWL GTYNTAEEAA  180
RAYDDAARRI RGDKAKLNFP ELPPSSVPAP ATPPLKKRCV VSPAESTQSS LESNGNYCNY  240
DPFEGGEIYG KKEVGREHEL KQQISSLESF LGLDEEGPSE VNGRGGGESN NSLDLWMLGD  300
LVTHHHQQQQ QQQQKQQQGQ QLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22144200360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223250.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8250980.0HQ825098.1 Prunus persica cultivar Venture ethylene responsive factor (ERF2.c) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223250.20.0PREDICTED: ethylene-responsive transcription factor RAP2-3
TrEMBLM5XD330.0M5XD33_PRUPE; Uncharacterized protein
STRINGXP_008223250.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-48ethylene-responsive element binding protein