PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223126.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 479aa    MW: 50463.3 Da    PI: 8.3535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223126.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-114973327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +  C++++rtG+C yG+rC+++H++
  XP_008223126.1 49 ETDCSYYLRTGICGYGSRCRYNHPR 73
                    568********************96 PP
2zf-CCCH39.59.4e-1395119327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtGtCk+G++Ck++H++
  XP_008223126.1  95 QPVCQYYMRTGTCKFGASCKYHHPK 119
                     689********************96 PP
3zf-CCCH36.39.7e-12140165227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++ +tG+Ck+G++CkF+H++
  XP_008223126.1 140 GERECSYYVKTGQCKFGATCKFHHPQ 165
                     789*********************97 PP
4zf-CCCH38.91.4e-12302328127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++rtG Ck+G++C+++H+p
  XP_008223126.1 302 PGQPECQYYMRTGDCKFGSSCRYHHPP 328
                     5789*********************97 PP
5zf-CCCH34.43.6e-11350374327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +lC ++a+ G Ck+G+ CkF H++
  XP_008223126.1 350 APLCTHYAQRGVCKFGPACKFDHPM 374
                     68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1554674IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-64673IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-64875IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-94973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.93992120IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-792119IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1095119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-695119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-597118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549138166IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5138165IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4144164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.37301329IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6301328IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6305329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4307328IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765347375IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8350374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6351377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5352372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MERYGRTTEG SQSDPSPEWT VPGPETGLEE TMWQLGLGPG ESYPERPNET DCSYYLRTGI  60
CGYGSRCRYN HPRDRSAVTG GARPGGLEYP ERAGQPVCQY YMRTGTCKFG ASCKYHHPKQ  120
GGSSSSPVSL NYYGYPLRQG ERECSYYVKT GQCKFGATCK FHHPQPAGIP LPVPSPAPQV  180
SPVPAAPLYQ TVQSPSVSSQ QYGVVFARPP LLPGSYVQSP YGQVLLSPGT IPFPGWSPYQ  240
APASALPSPS TQPGVGSGTL YGMSQLSPSA AAYTGMYQPI PLPSSLGLPT TSQKEHLFPE  300
RPGQPECQYY MRTGDCKFGS SCRYHHPPEV VGPKTTVALN PSGLPSRPGA PLCTHYAQRG  360
VCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYPVGSSI GTLAPSSSSS STELRPELNS  420
GSGKDLVSAR MSSSLSTSSG SVGSTVSKGG ITHLGVQQSA QGSGPSTSSG SSTESHSPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223126.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223126.10.0PREDICTED: zinc finger CCCH domain-containing protein 58
SwissprotQ6NPN31e-164C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLM5XDL40.0M5XDL4_PRUPE; Uncharacterized protein
STRINGXP_008223126.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-150C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]