PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223082.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 816aa    MW: 91521.9 Da    PI: 6.7116
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223082.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP114.65.6e-36137213177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv++C+ad++e+k yhrrh+vC ++++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k 
  XP_008223082.1 137 RCQVPSCRADIKELKGYHRRHRVCLACANASTVFLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 213
                     6***********************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-28133199IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.188135212IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.01E-32136215IPR004333Transcription factor, SBP-box
PfamPF031103.2E-26138212IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MEGPASPSST QSQRQRLDEA RVSEMEIQPP LTNQDTSTVW DWGDLLDFTV DDDLSISWGS  60
IEIDPAPALE ELPEDPNSNS GRVRKRDPRL ACTNFLAGHV PCACPEIDER MMELEEEEAG  120
HGKKRVKTAR APPGTARCQV PSCRADIKEL KGYHRRHRVC LACANASTVF LDGETKRYCQ  180
QCGKFHVLSD FDEGKRSCRR KLERHNNRRR RKPTNSKGGI RKESQREVQI EDTNCDGGAG  240
EDSIQLSSQL NDKEELPESE GGRISTLSSV PDSQIVHSDG GASLVASGET QMDGRKHDSN  300
NSLSPPNCDK SAYSSMCPTG RISFKLYDWN PAEFPRRLRH QIFQWLASMP VELEGYIRPG  360
CTILTVFIAM PKFMWMKLLE DPVSYVHDFV VVPGRMLSGR GNILVYLNDM ILRVVKDGTS  420
VIKGKVEMRA PRLHYVHPRY FEAGKPMEFV ACGSDLLQPK FRFLVSFSGK YLAYNYYPES  480
SPSQIEGDTA ANLDHQLYKI HVPQTEANCF GPAFIEIENE SGLSNFLPIL IADKEVCAEM  540
NTIQKRYEES FSLQGSRFSS SGSLSDSCEA SSLGHTAFSE VILDIAWLLK KPSSENFQQI  600
VTASQIQRFN YLFNFLISIK STTILEKVSQ NLKTLMDNME LHSANDGTSD ADMRLLKNYM  660
DYARDRQKID NSGVLVPWSG RLVQKEDIVS QSQSCFQNVG NLVVPLQCQD TEITVDGRVD  720
VMVGSTSHER SETVPLLSKK AVMKASLIKK WPRVANYCTS GEVSMCRSSG VFLRFRPALY  780
VICAAAICLG FCAVLFHPHK VGEFAVTMRR CLFDNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A5e-41135220387squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198210RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223082.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A251R0E20.0A0A251R0E2_PRUPE; Uncharacterized protein
STRINGXP_008223082.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7