PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222661.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 361aa    MW: 38430.5 Da    PI: 7.8678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222661.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-11295340655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  XP_008222661.1 295 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 340
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-14292351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.48E-11293344No hitNo description
Gene3DG3DSA:4.10.280.104.0E-13294351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-8295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MYPSTSSSSS QNPMGPGPSA TGLTRYGSAP GSLLTSAVDS VIGAVADREF SALRSQPHLG  60
HYFSGDGHGD DSSLTSSEST FKVNSSNGGR DATKPLLRSY GLNEMANSVG SPTSSSSCSS  120
PSALVRQRSS PAGFLSHLTA PDNNGGFSVT RGAGIYSSQG GTNGGHGHGV TRLKSQLSFT  180
RQDSLSQISE VSENAMEGVS SNNGHHRAMH SYPTTSFGME SWDNTNSIVF SAPPSKRAKN  240
MDGDLFNCLN ALESQFSLPQ TSLEMATVEK LLHIPEDSVP CKIRAKRGCA THPRSIAERE  300
RRTRISGKLK KLQDLVPNMD KQTSYADMLD LAVQHIKGLQ NQVEDLHKDL DNCTCGCKPN  360
T
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222661.10.0PREDICTED: transcription factor bHLH128
SwissprotQ8H1021e-100BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A251QZB70.0A0A251QZB7_PRUPE; Uncharacterized protein
STRINGXP_008222661.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]