PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008222502.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 143aa MW: 15884.2 Da PI: 8.8384

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008222502.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.4	3.4e-05	33	72	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ L++l+ + +K + a++L +A++YI+ L XP_008222502.1 33 KERKEKLGERIVALQQLVSPY-----GKTDTASVLLEAMDYIRFL 72 6788889999999**9999.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.2E-10	22	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.63	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-12	29	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-4	29	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.83E-6	33	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MTEHKRSPCS VDQSSFTSLA SKRHKTDLSI STKERKEKLG ERIVALQQLV SPYGKTDTAS 60 VLLEAMDYIR FLHEQVKVLS APYLESTPTA KMQELEPYSL RSRGLCLVPV SCTAGVAQSN 120 GADIWAPIKN TSPKFENAIS QFH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008222502.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222500.1	1e-103	PREDICTED: transcription factor bHLH113 isoform X1
Refseq	XP_008222502.1	1e-103	PREDICTED: transcription factor bHLH113 isoform X2
Refseq	XP_021834401.1	1e-103	transcription factor bHLH153 isoform X1
Swissprot	Q7XJU2	3e-63	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A314UD51	1e-102	A0A314UD51_PRUYE; Transcription factor bHLH113 isoform X2
TrEMBL	A0A314ZKI9	1e-102	A0A314ZKI9_PRUYE; Transcription factor bHLH113 isoform X1
STRING	XP_008222500.1	1e-103	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	1e-65	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]