PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008222385.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 714aa MW: 81025.3 Da PI: 6.012

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008222385.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	391.8	7.6e-120	341	712	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lL++cA+av+s d++ a++lL+++++++sp+gd++qRla+yf+ +L+arla+ + y+ l + + s +e l+a+++f+ sP+ ++s++ XP_008222385.1 341 STLLTQCAQAVASYDQRTASELLKQIRQHSSPYGDATQRLAHYFADGLEARLAGARTPSYSPLISMQIS---AAEILKAYEVFVTSSPFRTVSNF 432 579*************************************************989999888888887...8****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN++Il+ +e+e+r+H+iDf+is+G+QWp+++q L++Rp+gpp+lRiT+++ p++g +e++eetg+rL+k+A +++vpfe+nv +a+++e++ XP_008222385.1 433 LANRTILKLAEKETRLHVIDFGISYGFQWPCFIQRLSKRPGGPPKLRITAIEVPQPGfrPTERVEETGRRLKKYAGRFNVPFEYNV-IAQKWETI 526 ****************************************************9************************9.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++e+L+++++E+++Vn++ +l +++de+v ++s+rd vLkl+k+++P+++++ + +ns+ F++rf eal ++salfd +ea++pre+e r + XP_008222385.1 527 QFEDLKIDRNEVIVVNCMNRLRHIPDETVMVNSPRDIVLKLIKKINPDLFIHGVVNGTYNSPFFVTRFREALFHFSALFDVFEASVPREDERRLM 621 ******************************************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+++ g++i nvvaceg er+er et+++W+ r +aGFk++pl++++ k++k++l+ ++ + +r++ee +++++gWk+r+++++S+W+ XP_008222385.1 622 FEKAVYGKDILNVVACEGLERVERPETYKQWQVRNVRAGFKQLPLDQEILKKVKRMLKFMGyHNDFRIDEEGHWILQGWKGRTIMALSFWK 712 ******************************************************9999999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.592	314	691	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-117	341	712	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MDTLPERYSL SLERFNFGHG SASFYSNQNL VNGFQVNQES TGPICLSTNL DHPSDSNTFL 60 SSGSDGDTTD ISDYNCPVIK YISDILLEED LEGKPCMLQD CLALQAAEKS FYDVLNQKDP 120 LSPKQPLLSV HQSLENSDDD SPHSCHSSNA SIAAKTNWVF DPSETSYVQS SLVQSLPDAA 180 LDSDSLSEMQ RLEYFGGLRE ASKFLPNVKF ETIDLKGCQL MPPGLDQWPA TNTLMRRPDN 240 DDYSSTNSSK GKKNHQRDDG DYPEEGRSNK QPVAFADDSE PQEMFDEVLL CLGNHEFESC 300 SNDESLITEG SGKLQHNKQS KGSKTAGSKK QNNNRELVDL STLLTQCAQA VASYDQRTAS 360 ELLKQIRQHS SPYGDATQRL AHYFADGLEA RLAGARTPSY SPLISMQISA AEILKAYEVF 420 VTSSPFRTVS NFLANRTILK LAEKETRLHV IDFGISYGFQ WPCFIQRLSK RPGGPPKLRI 480 TAIEVPQPGF RPTERVEETG RRLKKYAGRF NVPFEYNVIA QKWETIQFED LKIDRNEVIV 540 VNCMNRLRHI PDETVMVNSP RDIVLKLIKK INPDLFIHGV VNGTYNSPFF VTRFREALFH 600 FSALFDVFEA SVPREDERRL MFEKAVYGKD ILNVVACEGL ERVERPETYK QWQVRNVRAG 660 FKQLPLDQEI LKKVKRMLKF MGYHNDFRID EEGHWILQGW KGRTIMALSF WKKA

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MDTLPERYSL SLERFNFGHG SASFYSNQNL VNGFQVNQES TGPICLSTNL DHPSDSNTFL  60
SSGSDGDTTD ISDYNCPVIK YISDILLEED LEGKPCMLQD CLALQAAEKS FYDVLNQKDP  120
LSPKQPLLSV HQSLENSDDD SPHSCHSSNA SIAAKTNWVF DPSETSYVQS SLVQSLPDAA  180
LDSDSLSEMQ RLEYFGGLRE ASKFLPNVKF ETIDLKGCQL MPPGLDQWPA TNTLMRRPDN  240
DDYSSTNSSK GKKNHQRDDG DYPEEGRSNK QPVAFADDSE PQEMFDEVLL CLGNHEFESC  300
SNDESLITEG SGKLQHNKQS KGSKTAGSKK QNNNRELVDL STLLTQCAQA VASYDQRTAS  360
ELLKQIRQHS SPYGDATQRL AHYFADGLEA RLAGARTPSY SPLISMQISA AEILKAYEVF  420
VTSSPFRTVS NFLANRTILK LAEKETRLHV IDFGISYGFQ WPCFIQRLSK RPGGPPKLRI  480
TAIEVPQPGF RPTERVEETG RRLKKYAGRF NVPFEYNVIA QKWETIQFED LKIDRNEVIV  540
VNCMNRLRHI PDETVMVNSP RDIVLKLIKK INPDLFIHGV VNGTYNSPFF VTRFREALFH  600
FSALFDVFEA SVPREDERRL MFEKAVYGKD ILNVVACEGL ERVERPETYK QWQVRNVRAG  660
FKQLPLDQEI LKKVKRMLKF MGYHNDFRID EEGHWILQGW KGRTIMALSF WKKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-50	329	711	7	377	Protein SCARECROW
5b3h_D	6e-50	329	711	7	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008222385.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222385.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A0A314Z4C5	0.0	A0A314Z4C5_PRUYE; Scarecrow-like protein 14
STRING	XP_008222385.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14