PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008222373.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 709aa MW: 80372.5 Da PI: 6.5946

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008222373.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	387.5	1.5e-118	336	707	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lL++cA+av+s d++ a++lL+++++++sp+gd++qRla+yf+ +L+arla+ + y+ l + + s +e l+a+++f+ sP+ ++s++ XP_008222373.1 336 STLLTQCAQAVASYDQRTASELLKQIRQHSSPYGDATQRLAHYFADGLEARLAGARTPSYSPLISMQIS---AAEILKAYEVFVTSSPFRTVSNF 427 579*************************************************989999888888887...8****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN++Il+ +e+e+r+H+iDf+is+G+QWp+++q L++Rp+gpp+lRiT+++ p++g +e++eetg+rL+k+Ae+++vpfe+nv +a+++e++ XP_008222373.1 428 LANRTILKLAEKETRLHVIDFGISYGFQWPCFIQCLSKRPGGPPMLRITAIELPQPGfrPTERVEETGRRLKKYAERFNVPFEYNV-IAQKWETI 521 ****************************************************9************************9.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++e+L+++++E+++Vn++ +l++++de+v ++s+rd vLkl+k+++P+++++ + +ns+ F++rf al ++salfd +ea++pre+e r + XP_008222373.1 522 QFEDLKIDRNEVIVVNCMNRLKHIPDETVMVNSPRDIVLKLIKKINPDLFIHGVVNGTYNSPFFVTRFRAALFHFSALFDVFEASVPREDERRLM 616 ******************************************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+ + gr+i nv+aceg er+er et+++W+ r +aGFk++p++++ k++k++l+ + + +r++e+ +++++gWk+r+++++S+W+ XP_008222373.1 617 FEKYVYGRDILNVIACEGLERVERPETYKQWQVRNVRAGFKQLPVDQELLKKMKRMLKFRGyHNDFRIDEDGHWILQGWKGRTIMALSFWK 707 *****************************************************98888899***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.246	309	686	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.1E-116	336	707	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MDSLLKRYSL SMERFNFGHG SASFYSNQNL VNGFQVNQES TSPVCLSTNL DHPSDSNTSL 60 SSGSDGDTID ISEYNRPVIK YISDILLEED LEGKPCMLQD CLALHAAEKS FYDVLNQNNH 120 PSPKQPPLSV HQSFENSDDD SPHSCHSSNG SIAAKTDWVF DPSEASHVQS SLVQSLSDAG 180 LVSDSLSEMQ SLRHFGGLGE ASKFLPNVKP EGYRLMPPGL DQWPSSTNIL MTTPDNDGYN 240 STNGSKGKKN HQREDADYPE EGRSNKQPVA FADNSEPQEM FDEVLLCHGN HGFESCSPDE 300 SLITEGSGKL QRNKQKGSKT ARSKKQNNNW ELVDLSTLLT QCAQAVASYD QRTASELLKQ 360 IRQHSSPYGD ATQRLAHYFA DGLEARLAGA RTPSYSPLIS MQISAAEILK AYEVFVTSSP 420 FRTVSNFLAN RTILKLAEKE TRLHVIDFGI SYGFQWPCFI QCLSKRPGGP PMLRITAIEL 480 PQPGFRPTER VEETGRRLKK YAERFNVPFE YNVIAQKWET IQFEDLKIDR NEVIVVNCMN 540 RLKHIPDETV MVNSPRDIVL KLIKKINPDL FIHGVVNGTY NSPFFVTRFR AALFHFSALF 600 DVFEASVPRE DERRLMFEKY VYGRDILNVI ACEGLERVER PETYKQWQVR NVRAGFKQLP 660 VDQELLKKMK RMLKFRGYHN DFRIDEDGHW ILQGWKGRTI MALSFWKNA

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MDSLLKRYSL SMERFNFGHG SASFYSNQNL VNGFQVNQES TSPVCLSTNL DHPSDSNTSL  60
SSGSDGDTID ISEYNRPVIK YISDILLEED LEGKPCMLQD CLALHAAEKS FYDVLNQNNH  120
PSPKQPPLSV HQSFENSDDD SPHSCHSSNG SIAAKTDWVF DPSEASHVQS SLVQSLSDAG  180
LVSDSLSEMQ SLRHFGGLGE ASKFLPNVKP EGYRLMPPGL DQWPSSTNIL MTTPDNDGYN  240
STNGSKGKKN HQREDADYPE EGRSNKQPVA FADNSEPQEM FDEVLLCHGN HGFESCSPDE  300
SLITEGSGKL QRNKQKGSKT ARSKKQNNNW ELVDLSTLLT QCAQAVASYD QRTASELLKQ  360
IRQHSSPYGD ATQRLAHYFA DGLEARLAGA RTPSYSPLIS MQISAAEILK AYEVFVTSSP  420
FRTVSNFLAN RTILKLAEKE TRLHVIDFGI SYGFQWPCFI QCLSKRPGGP PMLRITAIEL  480
PQPGFRPTER VEETGRRLKK YAERFNVPFE YNVIAQKWET IQFEDLKIDR NEVIVVNCMN  540
RLKHIPDETV MVNSPRDIVL KLIKKINPDL FIHGVVNGTY NSPFFVTRFR AALFHFSALF  600
DVFEASVPRE DERRLMFEKY VYGRDILNVI ACEGLERVER PETYKQWQVR NVRAGFKQLP  660
VDQELLKKMK RMLKFRGYHN DFRIDEDGHW ILQGWKGRTI MALSFWKNA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-48	317	706	1	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008222373.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222373.1	0.0	PREDICTED: scarecrow-like protein 11
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1R3L507	0.0	A0A1R3L507_PRUPE; Uncharacterized protein
STRING	XP_008222373.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-175	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]