PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222331.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 273aa    MW: 29712.2 Da    PI: 4.7542
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222331.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-194291255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  XP_008222331.1 42 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 91
                    678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.84E-314198No hitNo description
PROSITE profilePS5103220.7054299IPR001471AP2/ERF domain
SMARTSM003806.6E-3542105IPR001471AP2/ERF domain
PRINTSPR003673.4E-84354IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-2143100IPR016177DNA-binding domain
PfamPF008474.0E-124391IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-294399IPR001471AP2/ERF domain
PRINTSPR003673.4E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDFFNNSSKA NTSPSSSSKT KRKQQNQQTQ QPQQQQQQQE TRFLGVRRRP WGRYAAEIRD  60
PSTKERHWLG TFDTAEEAAL AYDRAARSMR GSKARTNFVY SDMPHGSSVT SIISPDESQR  120
DMSAFFATPL QPQPQTTNHQ QSFFTQDPFD AYPYSGGFGS GSYGPVSGGD EPGSGSGSGS  180
GSQSHTELPP LPPCVSSTCY GPDGVMGSDM DMGYFGFSEP TTNNGLDPMM NGSYMGFDSN  240
EFVQHSPLFG SMPPVSDAGI DGFDLGSSSA YFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-194398359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222331.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222331.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLM5XK051e-150M5XK05_PRUPE; Uncharacterized protein
STRINGXP_008222331.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.19e-36ERF family protein