PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222193.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 316aa    MW: 34588.9 Da    PI: 10.06
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222193.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.84.7e-4141117278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC++dlse+++yhrrhkvCe hsk+++v+++g+eqrfCqqCsrfh+l+efD++krsCrrrLa+hn+rrrk+q 
  XP_008222193.1  41 CLVDGCNSDLSECRDYHRRHKVCELHSKTSKVTIKGQEQRFCQQCSRFHSLEEFDQGKRSCRRRLAGHNKRRRKPQL 117
                     **************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.3E-3334102IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.1238115IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.18E-3939120IPR004333Transcription factor, SBP-box
PfamPF031101.1E-3041114IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MENGSKGKLK DPGVSMMKSS SSAASSKRPR RTNNGAQIAS CLVDGCNSDL SECRDYHRRH  60
KVCELHSKTS KVTIKGQEQR FCQQCSRFHS LEEFDQGKRS CRRRLAGHNK RRRKPQLEPM  120
STNLGRFFSS YQGTRFLQFG SPQVCPTIAV MNSAWGGAMK AENDDVLLHS HSQLSETRRN  180
LFPGSLSCQQ SIESMLSQAS ACQQLVGTNF ALGNSGNSHK MFANGLYRDV ESNRALSLLS  240
STPASRGKIG LSHAGQSSSI WPAQPLIPRL RYNVLGMEDD AAISNLVADG SSNANNMHFQ  300
GMFQIISDGS TAGAPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30411141184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197114KRSCRRRLAGHNKRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222193.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222193.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_008222194.10.0PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLA0A251R2N20.0A0A251R2N2_PRUPE; Uncharacterized protein
STRINGXP_008222192.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-52SBP family protein