PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008221876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | YABBY | ||||||||
Protein Properties | Length: 221aa MW: 24983.3 Da PI: 5.3555 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 206.3 | 1.1e-63 | 6 | 171 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkv.vtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekees 91 ++f+ ++q+CyvqC+fC til+vsvP +sl+++ vtvrCGhC+ llsvn++kas +lla+ + de+ +e lee ++n k ++++ XP_008221876.1 6 HLFDLPDQICYVQCGFCATILLVSVPCSSLSMLaVTVRCGHCSCLLSVNMMKASfvplHLLASLTQ-DEQREELCLEEVD--KQNNKPLDMRS-- 95 7899**************************98659****************998666566666665.4444443444333..33333333333.. PP YABBY 92 astsvsseklsenedee.vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 +s vs+ s+ne+e+ ++ p v++PPekrqr+Psayn fikeei+r+ka+nP+++h+eafs+aaknWa fP+i ++ XP_008221876.1 96 PSMVVSN---SDNEEEDtISMNPIVNKPPEKRQRAPSAYNHFIKEEIRRLKAENPSMTHKEAFSTAAKNWAQFPPIQYK 171 3333333...44555550555555***************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.0E-61 | 11 | 170 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.19E-9 | 116 | 167 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.7E-6 | 119 | 167 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 2.17E-4 | 126 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSAVNHLFDL PDQICYVQCG FCATILLVSV PCSSLSMLAV TVRCGHCSCL LSVNMMKASF 60 VPLHLLASLT QDEQREELCL EEVDKQNNKP LDMRSPSMVV SNSDNEEEDT ISMNPIVNKP 120 PEKRQRAPSA YNHFIKEEIR RLKAENPSMT HKEAFSTAAK NWAQFPPIQY KGDGPDGESC 180 TSQREENVTW DSDVPEAHED GKVFRERKAP RHSIWARTPF E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008221876.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP283468 | 7e-71 | KP283468.1 Prunus armeniaca INNER NO OUTER (INO) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008221876.1 | 1e-166 | PREDICTED: axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 2e-79 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | M5XQH8 | 1e-163 | M5XQH8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008221876.1 | 1e-166 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 9e-82 | YABBY family protein |
Publications ? help Back to Top | |||
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