PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221870.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 491aa    MW: 54481.9 Da    PI: 6.936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221870.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-08300341854
                     HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +Er+RR+ri+++ + Lr l+Pk +      K++  +i   AveYI +L
  XP_008221870.1 300 AERNRRSRIKDGHFALRALVPKiS------KMDIPAIIGDAVEYIEEL 341
                     7*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-179159IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.82E-8290346No hitNo description
PROSITE profilePS5088812.627292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-12292357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-8298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12300358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5300341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MRNLEGVAES LRPLVESKQW DYCVVWKLGD DPSRFIEMMG CCCGGGYEYD CVNVKEEEGE  60
SHSAKLCRDG FLKHPIRTKA CEALSQLPSS MPLYSGIHSE VIISAQPRWL SGHVNASGSN  120
PSQSHDYVGT RVLIPVLSDL IELFSTKNIP ENQKMLELFM APFNNSLKQE PMATHDYAIV  180
NLNASASLNE FHVDPLPEES PEKLLPSLNL ANFIPGPQVF PSSVSQTTSC PILEGSSSGS  240
NPSSEHPLLS SRSRKSRRGD NLLQQQTGLA SGSGSVVEKH KAKVTRKTGS GQYQSKNLFA  300
ERNRRSRIKD GHFALRALVP KISKMDIPAI IGDAVEYIEE LKKKVKELED ELREIEEEED  360
LTKNKADVKI LASDMRKEGS ICLISTEHKQ GSSSFVQKSP TAVQVEVNQI GKRDCLIKLF  420
YEQSRGGFAN LMENMDSLGL QVVDANVTTF DGNVLNILKV QANRDIQAKK LRDKLIQLTR  480
ETNQTVHKGI N
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894090.0KP689409.1 Prunus pseudocerasus isolate Unigene16081 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221870.10.0PREDICTED: transcription factor bHLH90
TrEMBLA0A251R3810.0A0A251R381_PRUPE; Uncharacterized protein
STRINGXP_008221870.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.17e-38bHLH family protein