PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221618.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 347aa    MW: 37924.3 Da    PI: 9.4628
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221618.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.38.6e-3462119258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                     ++v YkeClkNhAaslGgha+DGCgEfmps++++  ++++lkCaACgCHRnFHRr+++
  XP_008221618.1  62 MAVAYKECLKNHAASLGGHALDGCGEFMPSPSSNpMDPTSLKCAACGCHRNFHRRDQH 119
                     5799******************************9********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.9E-2864118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.4E-3166117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.7766117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2266116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-27207276IPR009057Homeodomain-like
SuperFamilySSF466891.97E-17210276IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-25215271IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDFTSANHLT PTATTIKTPD TDTEPPSPSE PKSISNRSLS FPNGSLKPHH PTIPPPQPPP  60
TMAVAYKECL KNHAASLGGH ALDGCGEFMP SPSSNPMDPT SLKCAACGCH RNFHRRDQHR  120
PKNVLSHHRL LLPAPPTHHH HHSSSPSPTQ SPISSQGPTL SPQSPPPVSH LPPSYFASPP  180
QMLLALSNGV SGPSDGHHHG LHPTTMKAEK YTNEKKRSRT KFSQEQKEKM NLFAEKVGWR  240
MQRSDERLVE EFCNEVGVRR GVFKVWMHNN KHGLKKRSER SSDGGERMII SNVKYETSNG  300
DDEGCGRVGF DSIVNAQTTS YNVNAIPQNG GTRASFHLSN TGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-202162721874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221618.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4262090.0AY426209.1 Prunus salicina clone CPSCT024 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221618.10.0PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ12e-66ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLM5XJ800.0M5XJ80_PRUPE; Uncharacterized protein
STRINGXP_008221618.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-60zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]