PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221333.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 352aa    MW: 39173.2 Da    PI: 8.4216
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221333.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-19131180255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  XP_008221333.1 131 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAALAYDAAARKLYG 180
                     69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.95E-22130190No hitNo description
PROSITE profilePS5103222.3131188IPR001471AP2/ERF domain
SMARTSM003807.4E-36131194IPR001471AP2/ERF domain
PfamPF008476.9E-14131180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-30131189IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-21131189IPR016177DNA-binding domain
PRINTSPR003671.5E-9132143IPR001471AP2/ERF domain
PRINTSPR003671.5E-9154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSCSPCQVFN QKPRYRLCLI TPSFLPCRIN TATLFTYGLS HAPKAKTEEK EEEKRERERK  60
REREKELGNT NTIPSSLNPR VVCHCQSTTM LKSEMSSVKL GERKQVKRPA QASSRKGCMR  120
GKGGPENAMC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSHEAALA YDAAARKLYG  180
SEAKLNLPDQ LVPHCHHHHH HQVPSSANTH MLPQTPNPSA QLTLLHQNPS GTSSAGLSND  240
YAAPLNNVAV PVLRDHYPNV KAHQPHGTYP EPKPEAEHSK MKVEENMSGN EGMDSGIFWG  300
NVSGNFPMFD DSIWAEAAMS LDFPVIEDHG IFSSNSVDGS GWGPLQPSPW CV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-18132188360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221333.10.0PREDICTED: dehydration-responsive element-binding protein 2D
TrEMBLM5XPZ21e-170M5XPZ2_PRUPE; Uncharacterized protein
STRINGXP_008221333.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-42ERF family protein