PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008221328.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

SRS

Protein Properties

Length: 367aa MW: 39493 Da PI: 7.1017

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008221328.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226.2	6.4e-70	130	285	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsst 89 s +++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerq+q + +++++++++ + +++kr+re+ + + +l++ XP_008221328.1 130 SSGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSGLQQNQQQQEqqqqqlqfRGDNPKRQRES-QGGAGSLACV 223 5689***********************************************9998888777765667777666777777775.7778899999 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +l+s++s le +++P+evss+avfrcvrvs++dd+++++aYqtav+igGhvfkG+LydqG++ XP_008221328.1 224 RLPSNTSG--LELAQFPSEVSSPAVFRCVRVSAMDDADDQYAYQTAVNIGGHVFKGLLYDQGPD 285 99998765..89999*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-67	132	285	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.5E-27	134	176	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.3E-28	236	284	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAGLFCLGGR DQAPTSSSKQ EGRGGGGGGD QERVEGGGGG NLYLYRSSNE GQAEIYNKGF 60 EIWPSQYHHP HQNLNYYSFG VDPSYSRRHL HNDDNDHNHN DVVPADDLSS GLRLAVMRQG 120 GGGGLGGSSS SGMNCQDCGN QAKKDCPHMR CRTCCKSRGF QCQTHVKSTW VPAAKRRERQ 180 EQFSGLQQNQ QQQEQQQQQL QFRGDNPKRQ RESQGGAGSL ACVRLPSNTS GLELAQFPSE 240 VSSPAVFRCV RVSAMDDADD QYAYQTAVNI GGHVFKGLLY DQGPDGQYYP SSSTGGGESS 300 SGGRHDHQEG GGAHPHHQQH NLVTVAATAG TTSHGGNPST TLLDPSLFPT PLNAFMAGTQ 360 IFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAGLFCLGGR DQAPTSSSKQ EGRGGGGGGD QERVEGGGGG NLYLYRSSNE GQAEIYNKGF  60
EIWPSQYHHP HQNLNYYSFG VDPSYSRRHL HNDDNDHNHN DVVPADDLSS GLRLAVMRQG  120
GGGGLGGSSS SGMNCQDCGN QAKKDCPHMR CRTCCKSRGF QCQTHVKSTW VPAAKRRERQ  180
EQFSGLQQNQ QQQEQQQQQL QFRGDNPKRQ RESQGGAGSL ACVRLPSNTS GLELAQFPSE  240
VSSPAVFRCV RVSAMDDADD QYAYQTAVNI GGHVFKGLLY DQGPDGQYYP SSSTGGGESS  300
SGGRHDHQEG GGAHPHHQQH NLVTVAATAG TTSHGGNPST TLLDPSLFPT PLNAFMAGTQ  360
IFPPPRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008221328.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008221328.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5
TrEMBL	A0A251R909	0.0	A0A251R909_PRUPE; Uncharacterized protein
STRING	XP_008221328.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-72	SHI-related sequence 5