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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_008221307.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 331aa MW: 37123 Da PI: 9.7599 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_008221307.1 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 381.8 | 1.1e-116 | 1 | 331 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88
mdd+g+re r k+ +y+ a + l +++ +q+m+++aerda+++ernla+sekkaa++erdmaf +aern a++erdn++++l+++e
XP_008221307.1 1 MDDSGHREngRIKAeQYKAAqgQWLMQHQpsMKQIMAIMAERDAALQERNLAFSEKKAALHERDMAF------IAERNSAIMERDNAIATLQYRE 89
9*****999999999999444433443431135**********************************......********************** PP
GAGA_bind 89 nsla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
nsl+ s++p+g+q+++g+k++++ qq +++ p++++ ++++r+++++++ p+ a+ ++ ++++k+p+e+k+++++kk++ks +k
XP_008221307.1 90 NSLNngnvSSCPPGCQISRGVKHMHHPQQhVHHpPHMNEASYGTRDMHTSDSVPMPPDASLPTK------SRQPKRPREPKTTAPNKKTSKSPRK 178
**9999999********************555589*************9999996654444333......3456688888888888888888888 PP
GAGA_bind 178 vkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
vk+es+d + sk+++k++dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yP
XP_008221307.1 179 VKRESEDLNkmtfdklhewkgsqdmggggddvnkhlvvSKSDWKCQDLGLNQVAYDESTMPAPVCSCTGILRQCYKWGNGGWQSSCCTTTMSMYP 273
888888844588899999***************************************************************************** PP
GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LP+++++r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti+
XP_008221307.1 274 LPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 331
*********************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MDDSGHRENG RIKAEQYKAA QGQWLMQHQP SMKQIMAIMA ERDAALQERN LAFSEKKAAL 60
HERDMAFIAE RNSAIMERDN AIATLQYREN SLNNGNVSSC PPGCQISRGV KHMHHPQQHV 120
HHPPHMNEAS YGTRDMHTSD SVPMPPDASL PTKSRQPKRP REPKTTAPNK KTSKSPRKVK 180
RESEDLNKMT FDKLHEWKGS QDMGGGGDDV NKHLVVSKSD WKCQDLGLNQ VAYDESTMPA 240
PVCSCTGILR QCYKWGNGGW QSSCCTTTMS MYPLPAVPNK RHARVGGRKM SGSAFNKLLS 300
RLAAEGHDLS NPVDLKDNWA KHGTNRYITI K
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
