PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220996.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 742aa    MW: 82857.5 Da    PI: 5.7856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220996.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07135157427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C ff++ G+C  GdrC F+Hgp
  XP_008220996.1 135 VPCIFFQK-GQCLKGDRCAFSHGP 157
                     69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033766IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183865IPR000571Zinc finger, CCCH-type
PfamPF156634.3E-113892No hitNo description
PROSITE profilePS5010310.4656894IPR000571Zinc finger, CCCH-type
SMARTSM003560.517093IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6131157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422131158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5132156IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-5135157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4136157IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MVVGAQPQSQ PQQQQQQQQQ QQKPPQQPET TAEEEALKRN TDCVYFLASP LTCKKGSECE  60
YRHSEYARVN PRDCWYWLNG NCLNLKCAFR HPPLDGLLGS PAATSAGPSL PLSHTVAAPT  120
TPATHVTYNS SKQAVPCIFF QKGQCLKGDR CAFSHGPNPM TGSKVPQAPA TIHGTEPSSL  180
KKVFGGLQKC TQELKVPQAS ASKSVGVPPQ AKPAPKFQTV PVRNGVSIER NVPSTKALDD  240
EARRYKATSV PPVSNGDSTS QANHLLQAHV LDHHGYQNGK DADEHLRESS PGFDVLVDDE  300
LGDSDYYHGE DQFGRTRGHE GRNLNSVNEY DLDRPADYNS MADVDRERFC DPRGYDPYDH  360
MQGQYAWDQH RASSERQLVG PARLERRGYR KSDSPENIDE LDLRHRLSKH RRVNGLRSIV  420
SHDYALDGHV EERKNRPRRD SQQLPSHEGS LSSRLHGRIK LPGGSPPVNG GDLHQEREVD  480
RGRSRGRLSP RRAPISSQQG RLRDRIKGRV EDYNNEERNF GAHRSRREIM DDRSDDFSRP  540
KRLSDLKGGK DGENKEQSYL GKRKNVMDNY QQSEGDISFE GPKPLSEILK RKREAEAAAS  600
GSGKSFVNKQ GNNQRESRVS NPGDSEFAVA EVKSSLPTVA KEKPKYATED AVGAEDEKTD  660
VAHGQSSQGH NAGELEEGMI DDEPLEDQEP EAEDQREGDY DYEQGEDGDY NYEEGENADG  720
EEEYMEDEDG DDFAKKIGVM FS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432439RKNRPRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220996.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220996.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLM5XNI50.0M5XNI5_PRUPE; Uncharacterized protein
STRINGXP_008220996.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137