PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220974.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 300aa    MW: 33444.1 Da    PI: 8.7255
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220974.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.5e-322073255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    prlrWtpeLH++F++a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  XP_008220974.1 20 PRLRWTPELHHCFLHAIERLGGHKKATPKLVLQLMDVKGLTISHVKSHLQMYRS 73
                    8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7291676IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-311677IPR009057Homeodomain-like
SuperFamilySSF466898.24E-161875IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-232073IPR006447Myb domain, plants
PfamPF002496.4E-92172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTSCSARNGA VRQYVRSKVP RLRWTPELHH CFLHAIERLG GHKKATPKLV LQLMDVKGLT  60
ISHVKSHLQM YRSMRSDLGT RQQVTDRSCT QPRKQSFEEH DDGCLDEVNG VSFYPSSKSI  120
RESDSQLIYS APRRSKRARA ETRSSISEGL QQQCSQGIYE TVSNPYSFDD NVLAMAQQQH  180
GGIKEPNPSA LSLPQPHLHY NFNHPSSQFS LQESDFFKVT KPEARADADQ DNEDGDCQLS  240
LSLSLHHPSS HKSKSNASSS EFSGAISSYS PRSNYKDCST SSSGNHRSIN LSLSIALCGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220974.10.0PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLA0A251R7F60.0A0A251R7F6_PRUPE; Uncharacterized protein
STRINGXP_008220974.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55393353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.15e-32G2-like family protein