PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008220848.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 458aa MW: 49903.5 Da PI: 7.1133

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008220848.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.5e-05	345	383	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_008220848.1 345 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 383 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.547	333	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.24E-5	343	387	No hit	No description
SuperFamily	SSF47459	1.03E-10	343	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-9	347	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MESANLHHQH HQLQENLVGS SSLAATPSCY AVGTKHAWTP SATLSSSGNS SNSGLDPLNS 60 SMVPDLGFHW LTNITSEHQS PHDLAKIKEE LTSSSSSDHH HHHHNSFPKL TEMLTSAPAS 120 TSIDHDQYYQ FMKNEEKDQL IMNDLSEKLL LKTLSSGCQI NSIINPHHHQ ISSAGEFYSN 180 DHHHHLLHNS NLIGGVPPGM PSRSGGHFSQ IYPSINVSNL NRSLSSSSIS SSSLDMNLQA 240 MDLLGASARF STGTSSSFST QPNSHDTLGL YKETHDSFAT LQQMHQSTDP QRLSCGNNNK 300 ISSFDNEITE VKRPGSSIEP KVNQATAPKK SRLESRTACP PFKVRKEKLG DRIAALQQLV 360 APFGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRNK SCKTMQGGVT EINGNDETKR 420 DLRSRGLCLV PLSCMSYVTS DIGEGGSIWP APNFGGGT

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MESANLHHQH HQLQENLVGS SSLAATPSCY AVGTKHAWTP SATLSSSGNS SNSGLDPLNS  60
SMVPDLGFHW LTNITSEHQS PHDLAKIKEE LTSSSSSDHH HHHHNSFPKL TEMLTSAPAS  120
TSIDHDQYYQ FMKNEEKDQL IMNDLSEKLL LKTLSSGCQI NSIINPHHHQ ISSAGEFYSN  180
DHHHHLLHNS NLIGGVPPGM PSRSGGHFSQ IYPSINVSNL NRSLSSSSIS SSSLDMNLQA  240
MDLLGASARF STGTSSSFST QPNSHDTLGL YKETHDSFAT LQQMHQSTDP QRLSCGNNNK  300
ISSFDNEITE VKRPGSSIEP KVNQATAPKK SRLESRTACP PFKVRKEKLG DRIAALQQLV  360
APFGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRNK SCKTMQGGVT EINGNDETKR  420
DLRSRGLCLV PLSCMSYVTS DIGEGGSIWP APNFGGGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008220848.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008220847.1	0.0	PREDICTED: transcription factor bHLH110 isoform X1
Refseq	XP_008220848.1	0.0	PREDICTED: transcription factor bHLH110 isoform X1
TrEMBL	M5XEA1	0.0	M5XEA1_PRUPE; Uncharacterized protein
STRING	XP_008220847.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	3e-56	bHLH family protein