PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220727.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 323aa    MW: 35643.6 Da    PI: 8.4834
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220727.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.1e-32141194255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_008220727.1 141 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 194
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.56E-15138195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-28139195IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-23141194IPR006447Myb domain, plants
PfamPF002492.0E-7142193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MYLMNPIMRT STSPLPDLSL QISPPSAADN QYHQADIGLS RKALYSADRS STTDSGSSGS  60
DLSHENGFYH LERSTGYNLS SGDEPKLSLG FEMKDHMNLP PVQLPRNFSN HHFHHHPQIY  120
GREFKRSART VGNVKRSIRA PRMRWTTTLH AHFVHAVQLL GGHERATPKS VLELMNVKDL  180
TLAHVKSHLQ MYRTVKSTDS KGTGHEGQTD MGLNQKPGIN GGLSSDKANR GSWPSSSETN  240
GSCNLSPGNA LTYSHSPQSN GTKVEEEESG RHVCNDGIGT KERRTTLDCS SLSASDMYLN  300
LEFTLGRPTA EWTVLNSLNL QMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16142196357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16142196357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16142196357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16142196357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16142196458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220727.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2834720.0KP283472.1 Prunus armeniaca aberrant testa shape (ATS) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220727.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A251RA190.0A0A251RA19_PRUPE; Uncharacterized protein
STRINGXP_008220727.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.14e-59G2-like family protein