PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220701.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 195aa    MW: 22400.4 Da    PI: 7.5478
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220701.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-18755254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                    +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  XP_008220701.1  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                    69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-34666No hitNo description
PROSITE profilePS5103220.719764IPR001471AP2/ERF domain
PfamPF008477.3E-11756IPR001471AP2/ERF domain
SMARTSM003803.3E-41770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-34764IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-20766IPR016177DNA-binding domain
PRINTSPR003671.0E-10819IPR001471AP2/ERF domain
PRINTSPR003671.0E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFPYNPNAS QSSASKLLSA TLTAKLHRCY MASLQMTKTS LQEPKKPQPC FVDTKNDNAE  120
KAIELGVNFP EKKPETRHEQ EEPEETMNWV FSKVKVESSQ QQFKPLEDDH IEQMIEELLH  180
YGSIELCSAV APQAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-17871670ATERF1
3gcc_A4e-17871670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220701.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695510.0KT369551.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220701.11e-146PREDICTED: protein PPLZ02
SwissprotQ94AW51e-78ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0M3SU381e-143A0A0M3SU38_9ROSA; AP2/EREBP family transcription factor-like protein 19
TrEMBLM5XSZ71e-143M5XSZ7_PRUPE; Uncharacterized protein
STRINGXP_008220701.11e-146(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-58ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]