PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008220492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HSF | ||||||||
Protein Properties | Length: 363aa MW: 40543.2 Da PI: 4.6566 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111 | 8.3e-35 | 42 | 133 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++e++ed++++ ++sws+ nsfvv+d+++f++++Lp+yFkh nf+SF+RQLn+YgF+kv+ ++ weF+++ F g+++ll++ XP_008220492.1 42 FLTKTFEMVEDPSTDAIVSWSRARNSFVVWDSHKFSTTLLPRYFKHGNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRHLLKT 127 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+++ XP_008220492.1 128 IKRRRH 133 ***975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.5E-60 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.26E-34 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.4E-37 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.4E-31 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-19 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 81 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-19 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MDGVVVKEEE IVTCTVGSSS SSSSSFSPQP IEGLHEVGPP PFLTKTFEMV EDPSTDAIVS 60 WSRARNSFVV WDSHKFSTTL LPRYFKHGNF SSFIRQLNTY GFRKVDPDRW EFANEGFLGG 120 QRHLLKTIKR RRHVSQSMQQ EGGGGACVEL GQYGLETELE RLKRDRNVLM TEIMRLRQQQ 180 QNSKEQVMAM EGRLQTTEKK QQQIMAFLAK ALNSPSFIQN LVEKKARNKE LRGMEIGRKR 240 RLAASPSVEN LQEKPKTHVV DYSASQDQGE LETMESQIET FFSAAALDNE SSSDIVDPHS 300 SSVGGNLGIV NETTWEELWS DELIGGNPEE DVIVVGDESD IDVAVEDLVA EPADWGGPAN 360 GDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-25 | 40 | 131 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-25 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-25 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-25 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 130 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008220492.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008220492.1 | 0.0 | PREDICTED: heat shock factor protein HSF30 | ||||
Swissprot | P41152 | 1e-133 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A251RB08 | 0.0 | A0A251RB08_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220491.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8225 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-122 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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