PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008220481.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 176aa MW: 20057.3 Da PI: 5.8144 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 80.3 | 3e-25 | 1 | 84 | 18 | 101 |
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +apyfpa++ ++f n+hklFG+ +++k+l+++++++r+ am s+ eAe rardPv G+++ i++l +++++++ el++++++l XP_008220481.2 1 MAPYFPATRFQQFLNAHKLFGVGKITKTLNSVSPQQRSSAMYSVKAEAEYRARDPVGGCYNEIKSLLWKIRTTEDELQHVHSQL 84 59*****************************************************************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.153 | 1 | 84 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-22 | 1 | 81 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MAPYFPATRF QQFLNAHKLF GVGKITKTLN SVSPQQRSSA MYSVKAEAEY RARDPVGGCY 60 NEIKSLLWKI RTTEDELQHV HSQLCMFRAG GENAMAHPLE GYEYNVVQDV EYDSQLHHQL 120 QQNIVQEQSG VVENHQEQSN VFDLRDEVVL EQDVNPIQVE GPVIHNSTSQ LQSGKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-17 | 1 | 90 | 28 | 117 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-17 | 1 | 90 | 28 | 117 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008220481.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008220481.2 | 1e-130 | PREDICTED: LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 6e-25 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A251RBT1 | 3e-99 | A0A251RBT1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220481.1 | 4e-97 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF39760 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-27 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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