PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220434.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 306aa    MW: 34601 Da    PI: 9.8607
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220434.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-14135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_008220434.1 135 PWTEDEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 179
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-41872IPR009057Homeodomain-like
SuperFamilySSF466898.58E-112474IPR009057Homeodomain-like
PROSITE profilePS512936.7052479IPR017884SANT domain
SMARTSM007173.1E-72577IPR001005SANT/Myb domain
CDDcd001671.78E-62974No hitNo description
PROSITE profilePS5129420.984128184IPR017930Myb domain
SuperFamilySSF466892.37E-16130183IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-18131183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.7E-12132179IPR009057Homeodomain-like
SMARTSM007171.9E-12132182IPR001005SANT/Myb domain
CDDcd001671.07E-10135180No hitNo description
PfamPF002493.7E-12135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKFEMEILSP SSYFSSSNWL LEESKSTQWT PAENKMFENA LAVHDKDTPD RWLKVAAMIP  60
GKTAMDVMKQ YEELEVDVGK IEAGLVPIPG YSASPFTLEW VNRHGYDGFK QSYGLGGKRS  120
SSARPADHER KKGVPWTEDE HKLFLLGLKK YGKGDWRNIS RNFVVTRTPT QVASHAQKYF  180
IRQLSGGKDK RRASIHDITT VNLNDMRTPS PDNKRPLSPE LSVPQQPNSA ATARTPFQWH  240
HQQGGGANMA FNQAHRNMFM SHPYGISSYG LKMQGQDLHK GAANNSYYGP QNMVFQMQSA  300
QHYPYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1629941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220434.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220434.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-143DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM5VZC70.0M5VZC7_PRUPE; Uncharacterized protein
STRINGXP_008220434.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-94MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]