PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008220265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 362aa MW: 39588.9 Da PI: 9.793 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.4 | 2.3e-31 | 290 | 347 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s+ gC ++k+ver+ +dp+++++tYeg+Hnh+ XP_008220265.1 290 DDYSWRKYGQKPIKGSPHPRGYYKCSSQrGCLARKHVERALDDPTMLIVTYEGDHNHS 347 99************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 8.2E-17 | 240 | 286 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 276 | 347 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.503 | 283 | 349 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-26 | 285 | 347 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-36 | 288 | 348 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 290 | 346 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MDTLVLLRNS FAAQMEENAV KEAASAGIQS VEKFISLISQ HHHQFQDSCF SSSSNPEAAT 60 EYKAVADMAV TKFRKVISLL DNGRTGHARF RRAPVTPSPP PPPPPLQETE TQIPRPSIQE 120 PHNPKTDQPP GFKTEQSSAF KVYCPTPSVR LPPLPHNPHL KTTPVVLTKS VLCAERRLDA 180 PTTINFSPSP SISAANSFMS SLTTGEAEGS VQHSMSSGFQ FTNMSQSSSG KPPLSSSSLK 240 RKCNSMDDVA ALRCGSSSGR CHCSKKRKSK VKRVVRVPAI SMKMADIPPD DYSWRKYGQK 300 PIKGSPHPRG YYKCSSQRGC LARKHVERAL DDPTMLIVTY EGDHNHSHSV TDPTPALVLE 360 SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-20 | 285 | 346 | 14 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-20 | 285 | 346 | 14 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008220265.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008220265.1 | 0.0 | PREDICTED: probable WRKY transcription factor 7 isoform X2 | ||||
Swissprot | Q9STX0 | 1e-107 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A251RBX8 | 0.0 | A0A251RBX8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220264.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 1e-79 | WRKY DNA-binding protein 7 |