PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220264.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 364aa    MW: 39771.2 Da    PI: 9.5514
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220264.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.3e-31292349359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s+ gC ++k+ver+ +dp+++++tYeg+Hnh+
  XP_008220264.1 292 DDYSWRKYGQKPIKGSPHPRGYYKCSSQrGCLARKHVERALDDPTMLIVTYEGDHNHS 349
                     99************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.3E-17242288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-32278349IPR003657WRKY domain
PROSITE profilePS5081130.503285351IPR003657WRKY domain
SuperFamilySSF1182901.83E-26287349IPR003657WRKY domain
SMARTSM007742.4E-36290350IPR003657WRKY domain
PfamPF031061.2E-26292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAVELMMGFI DSFAAQMEEN AVKEAASAGI QSVEKFISLI SQHHHQFQDS CFSSSSNPEA  60
ATEYKAVADM AVTKFRKVIS LLDNGRTGHA RFRRAPVTPS PPPPPPPLQE TETQIPRPSI  120
QEPHNPKTDQ PPGFKTEQSS AFKVYCPTPS VRLPPLPHNP HLKTTPVVLT KSVLCAERRL  180
DAPTTINFSP SPSISAANSF MSSLTTGEAE GSVQHSMSSG FQFTNMSQSS SGKPPLSSSS  240
LKRKCNSMDD VAALRCGSSS GRCHCSKKRK SKVKRVVRVP AISMKMADIP PDDYSWRKYG  300
QKPIKGSPHP RGYYKCSSQR GCLARKHVER ALDDPTMLIV TYEGDHNHSH SVTDPTPALV  360
LESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-202873481474Probable WRKY transcription factor 4
2lex_A3e-202873481474Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220264.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220264.10.0PREDICTED: probable WRKY transcription factor 7 isoform X1
SwissprotQ9STX01e-108WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A251RBU10.0A0A251RBU1_PRUPE; Uncharacterized protein
STRINGXP_008220264.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-80WRKY DNA-binding protein 7