PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218825.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 562aa    MW: 62089 Da    PI: 4.9715
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218825.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.3e-30271330159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_008218825.1 271 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 330
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-32256332IPR003657WRKY domain
SuperFamilySSF1182901.15E-27264332IPR003657WRKY domain
PROSITE profilePS5081129.161266332IPR003657WRKY domain
SMARTSM007743.2E-37271331IPR003657WRKY domain
PfamPF031064.6E-27272330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MGREKEIGLD IDLSLKIDSK QEKQGEDGDQ GEGEEEEREE EEDRNDDDDI EQGAKQEEED  60
EQAPRAQNNN QKAAEAAAGE VEDDASVVET SLEENNMKTD QELCVLQMEM SRIKEENKVL  120
RKGVQQTMKD YYDLQMKFTA LHQSNQNKDP QTFLSLDGND PDAVQGPKTI PKRSPLSPTR  180
EDMMKESQLG LSLRLQTSPT TNIQSHGREE DDDDKEENKK KEDLTSSSLA SSLLQNKLQR  240
TELAGISSHV TSQPNRKARV SVRARCESAT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA  300
PGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS TASAAASFML LDSSNHHLLD  360
GTPSNYTQAS LPNYYNVPDH RMNPSSHSSS NFRTINPHDP SKGIVLDLTN NFYDHNNTPQ  420
NIPMGSSSSH SSVPPGFSNW MMSTSRSASS YQNPNSITSH LLANSTISRS SGVGVEDQRS  480
WRGEENNMSL AENVTAIASD PKFRVAVAAA ITSLINKENH TANHPFGPRD GGENGSSTSN  540
NWALDHQSFS ANGKPIRKSS LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21258334176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218825.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218825.10.0PREDICTED: probable WRKY transcription factor 9
TrEMBLM5Y1150.0M5Y115_PRUPE; Uncharacterized protein
STRINGXP_008218825.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.17e-69WRKY DNA-binding protein 9