PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218646.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 678aa    MW: 75484.8 Da    PI: 6.3864
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218646.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3703.2e-22127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       +++    ++l+  d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  XP_008218646.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVAADLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 217
                     99****************************964333..4459************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_008218646.1 218 KGELRVGVRR 227
                     99******97 PP
2Auxin_resp108.85.6e-36253335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d  +  W nS+WrsLk
  XP_008218646.1 253 ASHAIATGTLFSVFYKPRTSRSEFLVSVNKYLEAHSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVCDNTSPGWANSEWRSLK 335
                     789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-43116256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-40123242IPR015300DNA-binding pseudobarrel domain
CDDcd100178.37E-20125227No hitNo description
PfamPF023622.5E-20127227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.025127229IPR003340B3 DNA binding domain
SMARTSM010194.1E-20127229IPR003340B3 DNA binding domain
PfamPF065074.7E-34253335IPR010525Auxin response factor
PfamPF023091.1E-6546590IPR033389AUX/IAA domain
PROSITE profilePS5174528.221554647IPR000270PB1 domain
SuperFamilySSF542775.4E-12556631No hitNo description
PfamPF023092.2E-5601644IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MTFSASNHPQ GSSRIGTSGD ALYKELWHAC AGPLVSLPRE GERVYYFPQG HMEQLEASMH  60
QGSEQQMPSF NLPSKILCKV VNVQLRAEPE TDEVYAQVTL LPEADQNEIT SPDPPLPETP  120
RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAA DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SSKKLVAGDA FIFLRGEKGE LRVGVRRLMR QPSNMPSSVI  240
SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFLVSV NKYLEAHSHK LSVGMRFKMR  300
FEGEEVPERR FSGTIVGVCD NTSPGWANSE WRSLKVQWDE PSSILRPDRV SPWELEPLVA  360
TTPLNSQPAL RNKRARPPVL PSPSPDLSAL GEWKSQVESP SAFSYSDPQR GRDIYPSPKY  420
NSASKANSLC FTGNNSLAAV SGNSMFWSNR VDGVTESFSP VTNKDSGERR QGTGNGCRLF  480
GIQLLENSNA EESSPVVMVS GKLGDIRPIS SFDAESDQHS EPSNVNRSDL PSGSCDAEKS  540
CLRSPQESQS RQIRSCTKVH MQGIAVGRAV DLTRFERYED LLKKLEEMFD IEGELCGSTK  600
KWQVVYTDDE DDMMMVGDDP WHEFCSMVRK IFVYTIEEVK RLSPKIKLTL NEEVKPGKPD  660
SEAAVNTEDQ SSIVGPAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033581355Auxin response factor 1
4ldw_A0.033581355Auxin response factor 1
4ldw_B0.033581355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218645.10.0PREDICTED: auxin response factor 1
RefseqXP_008218646.10.0PREDICTED: auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A2L1GGZ70.0A0A2L1GGZ7_9ROSA; Auxin response factor
STRINGXP_008218645.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]