PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218634.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 347aa    MW: 37896.5 Da    PI: 7.6879
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218634.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.43e-32110166360
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     +vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve e
  XP_008218634.1 110 GVRYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEVEGE 166
                     69**************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.2E-29111163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-25111173IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-31112163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.067113162IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.78E-19263334IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-30266335IPR009057Homeodomain-like
TIGRFAMsTIGR015654.2E-27273329IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MELSSQEAGE IPIPINSSYG GGHGHGHMIH HNHHHHDPAA AAAAAATVVP HNHSNLIPSS  60
AVPQNQNPSN TNGSSMPTSL DHHHHHPHSH PHHEEEEHVN IVPYSCKKVG VRYKECLKNH  120
AAAMGGTATD GCGEFMPSGE EGTIEALNCS ACNCHRNFHR KEVEGEQQPS PSSWDHNFHH  180
TINRVGVGSR KFLLGPGHHK NLLAAPPEGL GYHTMPSSRT AAPHQMIMSY NMGMGMGMGM  240
GMGMGAIPSE SDEQEEHDGG GAVGRPAAAQ LAKKRFRTKF TQEQKEKMFN FAEKVGWKIQ  300
KQEDSVVQNF CQEIGVKRRV LKVWMHNNKH NLAKKNPLPP PPPPPPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-232743311875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218634.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4929604e-64FJ492960.1 Rhamnus alaternus microsatellite RaA117 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218634.10.0PREDICTED: zinc-finger homeodomain protein 4
TrEMBLM5XPC60.0M5XPC6_PRUPE; Uncharacterized protein
STRINGXP_008218634.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-67homeobox protein 31