PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008218369.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 23317.9 Da PI: 7.055 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.3e-18 | 36 | 85 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr++ +g+WvAeIr+p + r +r +lg+f t eAa a+++a++kl+g XP_008218369.1 36 NFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSTEAALAYDEAARKLYG 85 69****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.2E-13 | 35 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.60E-29 | 35 | 95 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-30 | 36 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-37 | 36 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.496 | 36 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-20 | 36 | 94 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-9 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEKEGRKVGK KATGSMGRSR KGCMKGKGGP ENALCNFRGV RQRTWGKWVA EIREPNRGAR 60 LWLGTFNTST EAALAYDEAA RKLYGTSAKL NLPDHKPPSS SPANSSCSST KSTSDQYNMK 120 GGFGESMEGG SSGDGCDKLG GEACSDSLIF AGWSIGDDLW ASTTTGGGAS ASTGTNSPVL 180 SSWAGVCGEK DFLEMNDIGA AVMMGGGDEF INWDALGPPS SWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-17 | 36 | 93 | 5 | 63 | ATERF1 |
3gcc_A | 1e-17 | 36 | 93 | 5 | 63 | ATERF1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008218369.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008218369.1 | 1e-161 | PREDICTED: dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A251P0B6 | 1e-139 | A0A251P0B6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008218369.1 | 1e-160 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 7e-45 | ERF family protein |