PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218346.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 458aa    MW: 51491.8 Da    PI: 4.8685
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218346.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.71.1e-32231285155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr+rWt+eLHe+Fveav+qL Gse+AtPk il+lmkv+gLt++hvkSHLQkYR+
  XP_008218346.1 231 KPRMRWTQELHEAFVEAVNQLDGSERATPKGILNLMKVEGLTIYHVKSHLQKYRT 285
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.055228288IPR017930Myb domain
SuperFamilySSF466891.04E-17229285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-30230287IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-25231285IPR006447Myb domain, plants
PfamPF002492.3E-8233284IPR001005SANT/Myb domain
PfamPF143791.4E-19316363IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSNFGSSKAM SSSFPNLSTP LDDKYSRLPD SFQVSSQREK TRYSKLPQAS SPGHLFSSSS  60
RPNDVLFSSV SPCERRSQNS PFIFKLPVDE KSLSLTHSSH SEVQPTALIN YSEENKDISW  120
YPDSLQEFLH FPENVPDQNG LVDSSTGVIT SEDHAEKTDW SDWDPLISFD DALDPDWELP  180
IDVDAVDPKP KVLTPYSDIL VQPPQTQQHQ PVQSEEFRPS PEPLSTAPPT KPRMRWTQEL  240
HEAFVEAVNQ LDGSERATPK GILNLMKVEG LTIYHVKSHL QKYRTARYKP ESSEGACEKV  300
STPVEETNSL DLKASMGITE ALRLQVELQK RLHEQLENQR KLQLQIEEQG KYLEKMFEQQ  360
RKMEDSRVKA ASSTVDDHAT PPSNLVCPSS GEDKPETSKH DHEKTPISAS STSTPLEEGS  420
QDANRKKQKA QETESQEEPD HPVDVESGTQ PTKRARNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-29231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-29231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-29231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-29231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-29231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-29231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-29231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-29231289260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218346.10.0PREDICTED: protein PHR1-LIKE 1
TrEMBLM5VZ600.0M5VZ60_PRUPE; Uncharacterized protein
STRINGXP_008218346.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.22e-91G2-like family protein