PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00057154-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family RAV
Protein Properties Length: 636aa    MW: 69884.8 Da    PI: 8.8542
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00057154-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.75.7e-13175223155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      ++r++lg+f  +e+Aaka+++a+ k++g
  PSME_00057154-RA 175 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNKEEDAAKAYDRAAVKFRG 223
                       78****9888.8*********3.....5************************998 PP
2B3101.45.1e-32336438199
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+k+ tpsdv+k++rlv+pk++ae++     + ++e++  l +ed +g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++ +++
  PSME_00057154-RA 336 FDKAVTPSDVGKLNRLVIPKQHAEKYfpldvN-SNEKGLILNFEDNTGNAWRFRYSYWNSSQSYVLTKGWSRFVKDKKLEAGDIVSFHRGSTQ 427
                       89***************************954.4568889************************************************88889 PP

                       EE..EEEEE-S CS
                B3  89 efelvvkvfrk 99 
                       + +l+++++r+
  PSME_00057154-RA 428 TNRLYISWRRR 438
                       999*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.42E-24175230No hitNo description
SuperFamilySSF541712.81E-17175231IPR016177DNA-binding domain
PfamPF008472.7E-7176223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-21176231IPR001471AP2/ERF domain
PROSITE profilePS5103220.112176231IPR001471AP2/ERF domain
SMARTSM003804.6E-28176237IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.2E-40331440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-30332437IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-26334423No hitNo description
PROSITE profilePS5086314.974336439IPR003340B3 DNA binding domain
PfamPF023625.9E-29336438IPR003340B3 DNA binding domain
SMARTSM010192.7E-25336439IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MQGRGKRSAA TTILWQSEID SPPVTLSLAC CPPEVEISST ICSEKNASAS SRTSHFLGRQ  60
VQSARDETAN KAARKGDYST GDKQDDEVGS AMTEEFNSSF MCVSEKARLP KHEAAPFKDW  120
ASARSMEGLT GHRELERKGS GISGTMSGSG GESDGFEDLR RYSISMEQAG KLPSSQYKGV  180
VPQPNGRWGA QIYEKHQRVW LGTFNKEEDA AKAYDRAAVK FRGRDAMTNF SPVGDSDPEA  240
RFMREHTKEE IVEMLRKHTY AEEFNDHSKR IMMTVARSAT MNKTEASEPE GSGLRADTCQ  300
ESQGAVDQNT NANANGGSSS ASSAGDMACL PREHLFDKAV TPSDVGKLNR LVIPKQHAEK  360
YFPLDVNSNE KGLILNFEDN TGNAWRFRYS YWNSSQSYVL TKGWSRFVKD KKLEAGDIVS  420
FHRGSTQTNR LYISWRRRPL GQARLGASSQ SHQTNAGVVY PVNGSLSLSP FNSGTQAAVL  480
YNSRWMPIFL PSFSNPDAFS QFNSNSISPL VNKVDAIWSQ NPVTSLNGAL PFYLSPTPTK  540
QTDQGSSYDI KPGALPATTD LYLNLQNSLN SSNGSTNIKP MHPFVKPARP STVQELQTPA  600
STLDPAIKKG VRLFGVSLSE PQRVSAQHHG QLNLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-573324394114B3 domain-containing transcription factor NGA1
5os9_B5e-573324394114B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-94related to ABI3/VP1 1