PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00056872-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Dof

Protein Properties

Length: 296aa MW: 32410.6 Da PI: 6.9137

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00056872-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.3e-38	34	92	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprCdstntkfCyynnysl+qPr+fCk+CrryWtkGG+lr vPvGgg+rkn k+ PSME_00056872-RA 34 QEILKCPRCDSTNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGSLRSVPVGGGCRKNSKR 92 6889****************************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.6E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.068	37	91	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-24	37	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MQEEMGGLEG TVDMMDSYPP RQLLDRRLKP QADQEILKCP RCDSTNTKFC YYNNYSLTQP 60 RHFCKTCRRY WTKGGSLRSV PVGGGCRKNS KRNTNTNNNN GKRSSGEACS SATGSDQLSP 120 SLGGVSSDCK YYNGDGEELI GINYVNSLRQ VDHEAAFAGC SINSGVYGIQ ANDHQSSQSF 180 QPYHLPTALQ SLQGSLILGS DHAPNGFNQA ANRGDLGLVQ QQAAGAVSYD RESYHPYINM 240 SLDQSDGHSR APQQHKSNNM IENPPQGLVY EGGYWNGGVW PDLSAYGLSN INPNSM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF082840	0.0	EF082840.1 Picea sitchensis clone WS0298_N22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	T2B8B8	0.0	T2B8B8_PINPS; Dof9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-31	TARGET OF MONOPTEROS 6