PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00056753-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | C3H | ||||||||
Protein Properties | Length: 117aa MW: 13134 Da PI: 6.4932 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.8e-11 | 44 | 70 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++++tG C++G+ C+++H++ PSME_00056753-RA 44 PGQPDCAHYLKTGDCSFGAACRYNHPK 70 5789*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.868 | 43 | 71 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.3E-9 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-5 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 49 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MDLDVSSVNS VLTSTEPIYS AAKAIPTTQP REFPTKTEAF PERPGQPDCA HYLKTGDCSF 60 GAACRYNHPK ERNEQSSACM LSEMGLPLRP VSSFYSHFDV QLLLHILCFN FFLLKML |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117923 | 5e-98 | BT117923.1 Picea glauca clone GQ03917_G13 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010248777.1 | 3e-20 | PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1 | ||||
Refseq | XP_010248778.1 | 3e-20 | PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X2 | ||||
Swissprot | Q84W91 | 5e-18 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | B8LMQ0 | 6e-23 | B8LMQ0_PICSI; Uncharacterized protein | ||||
STRING | XP_010248777.1 | 1e-19 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 2e-20 | C3H family protein |