 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PSME_00056693-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 311aa MW: 34732.5 Da PI: 9.6128 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00056693-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 339.1 | 1.1e-103 | 1 | 311 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92
mdd+g + r++ e++ +k++ +l+ ms++aerda+i ern+a+sekkaa+ae++ a+ qrd a a+rn a++erd +++al +++++
PSME_00056693-RA 1 MDDEGRLDiRHWDTLEQS--VKDHPSLKYMSVLAERDAAILERNTAFSEKKAAFAEKETALFQRDVAYADRNTAILERDAAAAALDYARDGGW 91
9************98887..9******************************************************************999876 PP
GAGA_bind 93 .salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
+ + ++++ls++k ++ l + +p ++ ++ +r + p+ e++ ++ +k++k+ +++k+ ++ +k + ++++k+++k+ +
PSME_00056693-RA 92 nGQRSLSCGTLSNAKILQVLAE--NPTFSAREFQsMRPINVAFPSPVLETPLFEEPQKTVKRISKKKDGEKESPSKRNSDGSEPKRQKKQRKP 182
466778999***9999998877..677777777768888888888888877777777777766666666555555555555555444444332 PP
GAGA_bind 184 der.............skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqg 263
+k+e+k++d+v+ng+ +D+st+P+PvC+CtG+ +qCY+WGnGGWqSaCCtt+iS+yPLP++++rrgaR+agrKmS+g
PSME_00056693-RA 183 --GviteeglngevaiVKKEQKNLDVVINGIVFDISTMPIPVCTCTGVAQQCYRWGNGGWQSACCTTSISMYPLPMNPNRRGARVAGRKMSGG 273
..12345789999999***************************************************************************** PP
GAGA_bind 264 afkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
af+klLe+L aeGy+l+ p+DLk++WAkHGtnkfvtir
PSME_00056693-RA 274 AFRKLLERLGAEGYNLNYPIDLKNYWAKHGTNKFVTIR 311
*************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MDDEGRLDIR HWDTLEQSVK DHPSLKYMSV LAERDAAILE RNTAFSEKKA AFAEKETALF 60
QRDVAYADRN TAILERDAAA AALDYARDGG WNGQRSLSCG TLSNAKILQV LAENPTFSAR 120
EFQSMRPINV AFPSPVLETP LFEEPQKTVK RISKKKDGEK ESPSKRNSDG SEPKRQKKQR 180
KPGVITEEGL NGEVAIVKKE QKNLDVVING IVFDISTMPI PVCTCTGVAQ QCYRWGNGGW 240
QSACCTTSIS MYPLPMNPNR RGARVAGRKM SGGAFRKLLE RLGAEGYNLN YPIDLKNYWA 300
KHGTNKFVTI R
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF677529 | 0.0 | EF677529.1 Picea sitchensis clone WS02770_D01 unknown mRNA. |
| GenBank | FJ982281 | 0.0 | FJ982281.1 Picea sitchensis GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds. |
