PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056667-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 228aa    MW: 25488.4 Da    PI: 4.4611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056667-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-086302348
                      -HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                      +W+ Ia++++ gRt+ ++k++w+ yl
  PSME_00056667-RA  6 RWAQIAKHLP-GRTDSEIKNYWNGYL 30
                      5*********.***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.082134IPR017930Myb domain
SuperFamilySSF466895.54E-8536IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-11631IPR009057Homeodomain-like
CDDcd001672.82E-7630No hitNo description
PfamPF002491.3E-6630IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDLFCRWAQI AKHLPGRTDS EIKNYWNGYL KKNLVVDCND QSSSDVSEPS YSTILEHLNM  60
DGHITVEADH IVNDCTHVAK DSKGFIPSLD LCPCNSLISS HNFPAQLTRQ TMSSTAKASW  120
TNCSDEDLNK LIANAMPNYP IHDQNEILLQ DAGNSQHDNG MVSFSANDQN GYINVPCLAF  180
DSPDVNSMWS SCSLLNQIEK NDTLSTVIES QFNKMFSPDL PRLDQLLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.21e-10myb domain protein 26