PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056631-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 189aa    MW: 20942.6 Da    PI: 7.8217
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056631-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.5e-162372255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr p     +   r +lg+++t+e+Aa+a++ a  +l+g
  PSME_00056631-RA 23 QFKGIRVRK-WGKWVSEIRMP-----NsmGRLWLGSYDTPEKAARAYDFAVYCLRG 72
                      69******9.**********9.....3369********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.9E-282281IPR001471AP2/ERF domain
CDDcd000188.86E-262380No hitNo description
SuperFamilySSF541718.5E-192380IPR016177DNA-binding domain
PROSITE profilePS5103221.2592380IPR001471AP2/ERF domain
SMARTSM003804.2E-292386IPR001471AP2/ERF domain
PRINTSPR003674.8E-82435IPR001471AP2/ERF domain
PfamPF008473.0E-92472IPR001471AP2/ERF domain
PRINTSPR003674.8E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAKTSQNQTC RSKPENRSLK SRQFKGIRVR KWGKWVSEIR MPNSMGRLWL GSYDTPEKAA  60
RAYDFAVYCL RGSKAKLNFP SIPPQIPCAS SLSPPQIQAS AAKFAAEEFR LPSEDDASFS  120
PASSGSKPFS FSGSGSEAEC RNDGQEIWAE HGPAFWDSVL LECLESGKSL NLDDFPPLDD  180
SMNYYGVLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1523811473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1038991e-107BT103899.1 Picea glauca clone GQ02803_N18 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843906.12e-37ethylene-responsive transcription factor ERF017
SwissprotQ9C5915e-35ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA9NQM11e-83A9NQM1_PICSI; Uncharacterized protein
STRINGERN055816e-37(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-37ERF family protein