PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00056573-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Dof

Protein Properties

Length: 376aa MW: 42399 Da PI: 8.2519

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00056573-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	31	91	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +ekalkcprC+stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGg++rknkk++ PSME_00056573-RA 31 PEKALKCPRCESTNTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNVPVGGSCRKNKKVK 91 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	29	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.7E-34	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.078	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MQEKVAMDHK DMMGSSSSGS LMERGGLKPQ PEKALKCPRC ESTNTKFCYY NNYSLSQPRY 60 FCKTCRRYWT KGGTLRNVPV GGSCRKNKKV KRSPPDQSLA RQNELTSTST HGEDHNNNND 120 FRSCCTFENR DNIASLSNSM YYSGNNNNDI LHKAFPRIQE PGVDGFPFTN CNNSDFLGST 180 GVGRPSLSNY LSPNMSSLAG LWAANNTQLR PISSSAFSGS GFDKSLKWVE HEALRPADPS 240 PIMESHQQVS EPAAVQNFAP FTMDYGLNRG HLDRVQWRLQ HEQQQQKFEP TMRESEGHAM 300 LRLEDQSVEN PRRQSKALED FMSSFGCNKG GLAEKEWQNP SSDQTNYETA KDSIYWNGRS 360 WPYLPNYASS SVSPLI

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MQEKVAMDHK DMMGSSSSGS LMERGGLKPQ PEKALKCPRC ESTNTKFCYY NNYSLSQPRY  60
FCKTCRRYWT KGGTLRNVPV GGSCRKNKKV KRSPPDQSLA RQNELTSTST HGEDHNNNND  120
FRSCCTFENR DNIASLSNSM YYSGNNNNDI LHKAFPRIQE PGVDGFPFTN CNNSDFLGST  180
GVGRPSLSNY LSPNMSSLAG LWAANNTQLR PISSSAFSGS GFDKSLKWVE HEALRPADPS  240
PIMESHQQVS EPAAVQNFAP FTMDYGLNRG HLDRVQWRLQ HEQQQQKFEP TMRESEGHAM  300
LRLEDQSVEN PRRQSKALED FMSSFGCNKG GLAEKEWQNP SSDQTNYETA KDSIYWNGRS  360
WPYLPNYASS SVSPLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	5e-35	TARGET OF MONOPTEROS 6