PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00056437-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 8764.76 Da PI: 5.8328 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 10 | 51 | 3 | 42 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcks 42 +WTte +++ +a + + ++ +W+ +a+++ g++++++k PSME_00056437-RA 10 NWTTEQNKQFEKALAIYDKDtadRWHNVASMVT-GKSPEEVKR 51 8*******************************9.*******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.583 | 6 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 8.0E-6 | 7 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-5 | 9 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.28E-6 | 10 | 51 | No hit | No description |
Pfam | PF00249 | 2.4E-6 | 10 | 51 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.05E-11 | 10 | 63 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MASSSNNGTN WTTEQNKQFE KALAIYDKDT ADRWHNVASM VTGKSPEEVK RNYEILEEDL 60 NGIAAGKVPI PKYKYLAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-27 | 1 | 74 | 1 | 74 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT113557 | 2e-59 | BT113557.1 Picea glauca clone GQ03413_A01 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021731579.1 | 2e-32 | protein RADIALIS-like 4 | ||||
Refseq | XP_021738626.1 | 2e-32 | protein RADIALIS-like 4 | ||||
Swissprot | Q1A173 | 8e-28 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | D5ADC1 | 2e-29 | D5ADC1_PICSI; Uncharacterized protein | ||||
STRING | XP_010539897.1 | 2e-29 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 3e-30 | RAD-like 6 |