PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00056405-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 465aa MW: 52745.4 Da PI: 5.3576

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00056405-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.7	8.2e-11	17	96	5	46
-HHHHHHHHHHHHHTTTT.......................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGgg.......................................tWktIartmgkgRtlkqcksrwqk 46 +++E++ +++++ +G++ +W+ Ia++m+ gRt++ +k++w++ PSME_00056405-RA 17 SPQEEQSIIHLHSIFGNRfsflsipaalldynsliiivhinryslsfdlwnewhqrrRWSQIAAHMP-GRTDNYIKNYWNT 96 89***************************************************************.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-18	3	31	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.98	8	98	IPR017877	Myb-like domain
SMART	SM00717	1.1E-6	12	100	IPR001005	SANT/Myb domain
CDD	cd00167	6.80E-6	70	96	No hit	No description
SuperFamily	SSF46689	4.29E-7	70	104	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-18	71	103	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-5	73	96	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MRWVNYLRPG LKNSDISPQE EQSIIHLHSI FGNRFSFLSI PAALLDYNSL IIIVHINRYS 60 LSFDLWNEWH QRRRWSQIAA HMPGRTDNYI KNYWNTCIKR KLKLKQRLLV SSSTEGTSNN 120 NNNTNLIIPS QSDHTNKTNY SVSARDHDPS TSFHHSAKGW GAMPEERLQS LNNIFNVVTT 180 AENQHNLVHD GLGLKHEQVQ EHEELGLKHE QVQERSIEFV STDVGPTNNS LISCSPLWIE 240 STSSDSHKNE SFSQVFTYPT SLEVQGHTYQ TAKSLECDQL DVDSWTTLAP HEAHASANTT 300 LSTIPALVEI NNSLKGKIEN DVHIIDENEN EMIIDHLLFT SSFDFSNVYP NAADFCNVFP 360 GLESYPPHNS SSQIHAPEIL WDDLDQYLKI HSQDQYDGKD LGNLTYDEVK FGAPTYITID 420 RQKSSQSPPI IGVMVDNQQQ CSGIPNEEPK TTEVPTSLGS KTLEF

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MRWVNYLRPG LKNSDISPQE EQSIIHLHSI FGNRFSFLSI PAALLDYNSL IIIVHINRYS  60
LSFDLWNEWH QRRRWSQIAA HMPGRTDNYI KNYWNTCIKR KLKLKQRLLV SSSTEGTSNN  120
NNNTNLIIPS QSDHTNKTNY SVSARDHDPS TSFHHSAKGW GAMPEERLQS LNNIFNVVTT  180
AENQHNLVHD GLGLKHEQVQ EHEELGLKHE QVQERSIEFV STDVGPTNNS LISCSPLWIE  240
STSSDSHKNE SFSQVFTYPT SLEVQGHTYQ TAKSLECDQL DVDSWTTLAP HEAHASANTT  300
LSTIPALVEI NNSLKGKIEN DVHIIDENEN EMIIDHLLFT SSFDFSNVYP NAADFCNVFP  360
GLESYPPHNS SSQIHAPEIL WDDLDQYLKI HSQDQYDGKD LGNLTYDEVK FGAPTYITID  420
RQKSSQSPPI IGVMVDNQQQ CSGIPNEEPK TTEVPTSLGS KTLEF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	1e-15	myb domain protein 46