PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00056398-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 386aa MW: 42578.2 Da PI: 4.8011

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00056398-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.2e-08	16	38	23	46
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia+ ++ gRt++++k++w++ PSME_00056398-RA 16 RWSLIAAQLP-GRTDNELKNYWNS 38 5*******.*********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.138	1	44	IPR017930	Myb domain
CDD	cd00167	6.84E-6	14	37	No hit	No description
SuperFamily	SSF46689	1.55E-6	14	45	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-11	15	44	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-5	15	38	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MDDCVNDKQS NAVFGRWSLI AAQLPGRTDN ELKNYWNSRI KKKLELKQNL SCSSSNCNAE 60 TKAQIPSRSK TNSVSIHAHH VFTSSRSSQQ CMDVLPEGSE PPNNAFNVVT SGENLLCVPG 120 VMDLNHIEIQ DQSDHEFLID PDSTNNQQIC YPNLWTNATS LQIHESFSCP AAFISPSVHA 180 NSSTCNQLTI ESCRTAVAPC FADFSIGSTG INVPALVESD SSKEKLEIDE NHITIGYSNA 240 TDSFQVVHPR KYTSSEAEIS ILKKCLNLYE DTTHQSYPAL DPQIQFSWPA NMFSAIHSED 300 SGGYLNLSSD VNLGVPTYID NSTRFKTFVL PHIEEAIKAN PIPTLLGPGK RNGQLGTECT 360 GEAGQFTTWA HHDMYNINDV DQIDLT

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MDDCVNDKQS NAVFGRWSLI AAQLPGRTDN ELKNYWNSRI KKKLELKQNL SCSSSNCNAE  60
TKAQIPSRSK TNSVSIHAHH VFTSSRSSQQ CMDVLPEGSE PPNNAFNVVT SGENLLCVPG  120
VMDLNHIEIQ DQSDHEFLID PDSTNNQQIC YPNLWTNATS LQIHESFSCP AAFISPSVHA  180
NSSTCNQLTI ESCRTAVAPC FADFSIGSTG INVPALVESD SSKEKLEIDE NHITIGYSNA  240
TDSFQVVHPR KYTSSEAEIS ILKKCLNLYE DTTHQSYPAL DPQIQFSWPA NMFSAIHSED  300
SGGYLNLSSD VNLGVPTYID NSTRFKTFVL PHIEEAIKAN PIPTLLGPGK RNGQLGTECT  360
GEAGQFTTWA HHDMYNINDV DQIDLT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65790.1	9e-12	myb domain protein 68