PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00056307-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 107aa MW: 12446 Da PI: 4.8843 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 31.7 | 4.2e-10 | 44 | 91 | 53 | 100 |
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +red++s++vyeA+ rdPv+ vgvi++l++++++++++ a++++e PSME_00056307-RA 44 QREDVVSTMVYEARQIFRDPVHDYVGVISDLHKKVAEMQTQSASTQTE 91 89***************************************9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.55 | 1 | 92 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-8 | 44 | 89 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MVLQDLPAEQ REDAIRSMVY EAKQRFQRED VVSSMVYEAR QRFQREDVVS TMVYEARQIF 60 RDPVHDYVGV ISDLHKKVAE MQTQSASTQT ELDNISVQHA NLLTLSL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LP64 | 2e-21 | B8LP64_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-13 | LOB domain-containing protein 1 |