PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00056265-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LSD | ||||||||
Protein Properties | Length: 95aa MW: 9894.68 Da PI: 7.0706 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.4 | 2.4e-13 | 26 | 50 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrtlL YP G+p+V+Ca+C+tV PSME_00056265-RA 26 CSGCRTLLVYPQGSPNVCCAVCNTV 50 ************************9 PP | |||||||
2 | zf-LSD1 | 26.8 | 8.4e-09 | 64 | 88 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg CrtlL+Y GA+ V+C++C tV PSME_00056265-RA 64 CGCCRTLLMYAHGATGVQCSCCSTV 88 ***********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 5.4E-13 | 23 | 51 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.7E-12 | 26 | 50 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.5E-12 | 61 | 90 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.2E-9 | 64 | 88 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MPLHMNPYPP QPMPLPPPNG QGQLVCSGCR TLLVYPQGSP NVCCAVCNTV TVAPPGAEMA 60 QLICGCCRTL LMYAHGATGV QCSCCSTVNL AMEAN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010269986.1 | 8e-38 | PREDICTED: protein LSD1 | ||||
Refseq | XP_010269987.1 | 8e-38 | PREDICTED: protein LSD1 | ||||
Refseq | XP_010269988.1 | 8e-38 | PREDICTED: protein LSD1 | ||||
Swissprot | Q93ZB1 | 5e-32 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A0C9RP33 | 2e-44 | A0A0C9RP33_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_6820_1247 transcribed RNA sequence | ||||
STRING | XP_010269986.1 | 3e-37 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 2e-21 | lsd one like 1 |
Publications ? help Back to Top | |||
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