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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00056242-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 288aa MW: 32335.4 Da PI: 4.8865 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 30.3 | 9.6e-10 | 8 | 32 | 21 | 46 |
TT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqk 46
+ +W++Ia++++ gRt++++k++w++
PSME_00056242-RA 8 NCRWSAIASHIP-GRTDNDIKNHWHS 32
345*********.***********86 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 14.744 | 1 | 38 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 3.6E-11 | 8 | 38 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 4.06E-8 | 8 | 41 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 1.9E-7 | 9 | 32 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 2.56E-6 | 10 | 34 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 288 aa Download sequence Send to blast |
MSCTTLLNCR WSAIASHIPG RTDNDIKNHW HSRLKKQLIL MGIDPVTHGL LPMPDMDSFI 60 ASSSITGSSI AAGWNTALAE SDLGRMSRDY MNSIADEDSW LRISQIGKLS AKIDNRVIGP 120 PMSACPSSEN SLLLPSISPD QLSLPDTSRW LHGFRKQIKR DFDCLKDSAE NNAFVQEALQ 180 FSNLERTSEE MPNIIQSSEI PSNLINETYV FHNELPSERE IMYSDYKPFY WQGMPEILQN 240 AIQYHSDGPF GSPVSTADIT AARSDLLNKG NEILYWDNLL KLTENGRP |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G01140.1 | 4e-15 | myb domain protein 106 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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