PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00056199-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 133aa MW: 15418.8 Da PI: 9.6889 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 60.6 | 4.2e-19 | 41 | 86 | 1 | 46 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l PSME_00056199-RA 41 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKVFGASNVSKML 86 7*******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.584 | 40 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-18 | 41 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MNFREKVEGF DSVNRRVKRI ETERVRRTMI GAQSSPNTST PCAACKLLRR RCAQECPFSP 60 YFSPHEPQKF ACVHKVFGAS NVSKMLLVRL YSELNSIIHI QQKQEDAHCF LKISIRLLAC 120 NANTFQIYEH ENK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-20 | 32 | 86 | 2 | 56 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-20 | 32 | 86 | 2 | 56 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111908 | 1e-103 | BT111908.1 Picea glauca clone GQ03307_E24 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016684598.1 | 2e-35 | PREDICTED: LOB domain-containing protein 15-like | ||||
Refseq | XP_021625453.1 | 2e-34 | LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 8e-32 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2R6WX81 | 6e-37 | A0A2R6WX81_MARPO; Uncharacterized protein | ||||
STRING | cassava4.1_029925m | 6e-34 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 3e-34 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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