PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00056140-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 26508 Da PI: 4.6754 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.6e-17 | 24 | 74 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kG+r +k +g+Wv+eIr p++ r + +lg++ tae+Aa+a++aa +l+g PSME_00056140-RA 24 SQFKGIRKRK-WGSWVSEIRMPRS---REKLWLGSYTTAEQAARAYDAAVCCLRG 74 789****999.**********954...4*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.18E-26 | 24 | 84 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-18 | 24 | 84 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-28 | 25 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.061 | 25 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-31 | 25 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 25 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAKIPRAEHA QALAEEDPAA LKSSQFKGIR KRKWGSWVSE IRMPRSREKL WLGSYTTAEQ 60 AARAYDAAVC CLRGPNATFN FPNSVPSIPS ASSLSRHQIK LAAARYATLD QLPSISASAH 120 NNNNNENGNA NNDNDNNKAR DDSASPSQSA LVQETMSLMN GQHHQQEDDL ALWESLFAGP 180 DDCPAKNSEN LPSTDEASAL KLIPFPSPSW AEQRHEQPEA DEEGDMNSFL DVTDLWNFGD 240 V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ADJ9 | 4e-58 | D5ADJ9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 7e-30 | ERF family protein |