PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00056117-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 178aa MW: 20578.4 Da PI: 9.8679 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 53 | 1.5e-16 | 1 | 172 | 1 | 173 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92 mdd+g + ++ e++ +k++ l+ ms++a+rda i +rn+a+ ekkaa+ae++ a+ qrd a a rn a+++ d ++++l +v+++ PSME_00056117-RA 1 MDDEGRLDiWHWDTLEQS--MKDHPILKYMSVLADRDASILKRNTAFYEKKAAFAEKETALFQRDVAYAARNTAILKCDAAATTLDYVRDGGW 91 999999998888877776..*******************************************************************999877 PP GAGA_bind 93 .salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173 + +++++ls tk ++ l + +p + ++ +r + i e++ ++ +k++k+ +++k ++ +k + +++ PSME_00056117-RA 92 nGQRRFSCRTLSTTKILQVLVE--NPTFFAREFQsMRPINVAFPSSILETPLFEEPQKTVKRISKKKYGEKESPSKRNYDGSE 172 3566789999999999997766..44333333333555555555555555544444444444444443333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 6.0E-9 | 1 | 155 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDDEGRLDIW HWDTLEQSMK DHPILKYMSV LADRDASILK RNTAFYEKKA AFAEKETALF 60 QRDVAYAARN TAILKCDAAA TTLDYVRDGG WNGQRRFSCR TLSTTKILQV LVENPTFFAR 120 EFQSMRPINV AFPSSILETP LFEEPQKTVK RISKKKYGEK ESPSKRNYDG SEPTRKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF677529 | 1e-164 | EF677529.1 Picea sitchensis clone WS02770_D01 unknown mRNA. | |||
GenBank | FJ982281 | 1e-164 | FJ982281.1 Picea sitchensis GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LNW9 | 5e-92 | B8LNW9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.2 | 7e-08 | basic pentacysteine 6 |