PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056098-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 373aa    MW: 40422.4 Da    PI: 7.9743
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056098-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171661147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEd  l ++v+++G+++W++I+r ++ gR++k+c++rw + 
  PSME_00056098-RA 16 KGPWSPEEDASLQRLVQKYGPRNWTLISRGIP-GRSGKSCRLRWCNQ 61
                      79******************************.***********985 PP
2Myb_DNA-binding55.71.1e-1770112347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+ Ed  +++a++q+G++ W+tIar ++ gRt++ +k++w++ 
  PSME_00056098-RA  70 PFTPSEDAAILQAHAQHGNK-WATIARSLP-GRTDNAIKNHWNST 112
                       89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.7451166IPR017930Myb domain
SuperFamilySSF466891.8E-3113109IPR009057Homeodomain-like
SMARTSM007177.4E-161564IPR001005SANT/Myb domain
PfamPF002491.9E-171661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-241769IPR009057Homeodomain-like
CDDcd001677.23E-151860No hitNo description
SMARTSM007172.1E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129421.13368117IPR017930Myb domain
CDDcd001679.51E-1370113No hitNo description
PfamPF002497.2E-1570112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2370116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAMSNGRLSE DLDRIKGPWS PEEDASLQRL VQKYGPRNWT LISRGIPGRS GKSCRLRWCN  60
QLSPQVEHRP FTPSEDAAIL QAHAQHGNKW ATIARSLPGR TDNAIKNHWN STLRRRCRDS  120
DKGIVVHLDD EISSLDAARK RSSDGFSHDG SSALEDNCCS SWEVDSKRLK RLGELGAEQG  180
PDVEVEVEVS DRSDSNPGRV LFRPVPVSSF FGSFGKTVAN LQETAPGSVG VDPPTSLSLS  240
LPGLDPATPS SKPPSPKDFH NTITDNNNNP TPPAVGYMRA DEAVERLGTA VKATVASMLA  300
PVLSSSPRGI NPPAVSSDLL ALMRDMVAKE VHKYMSSHHQ PAMYTPLSPH PEFLGAAGLV  360
RNVVLGGALH LNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-39151163104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-39151163104C-Myb DNA-Binding Domain
1msf_C1e-39151163104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1027560.0BT102756.1 Picea glauca clone GQ02014_D18 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024536333.17e-78transcription factor MYB44-like
TrEMBLA5JYF10.0A5JYF1_PICGL; R2R3-MYB transcription factor MYB7
STRINGPP1S10_267V6.12e-69(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.15e-60myb domain protein r1