PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00056008-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 21269.9 Da PI: 6.379 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.8 | 2.2e-44 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck+lrr+CakdCv+apyfpa+qp+kfa vhk+FGasnv+k+l++lp e+r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq+++l+ + PSME_00056008-RA 11 PCASCKLLRRRCAKDCVFAPYFPASQPQKFASVHKVFGASNVSKMLQELPVEQRADAVSSMVYEANARVRDPVYGCVGAISYLQQQVASLQMQ 103 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e PSME_00056008-RA 104 LARAQAE 110 **99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.379 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-44 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGSSKTSGNS PCASCKLLRR RCAKDCVFAP YFPASQPQKF ASVHKVFGAS NVSKMLQELP 60 VEQRADAVSS MVYEANARVR DPVYGCVGAI SYLQQQVASL QMQLARAQAE MMCMQMQQQE 120 SLLSDSTDNI DTKQSIMATM DDHQLHYDQI LANNYHHPNS DCSTSSQDSP HQLTHAQTAY 180 DSLDIREPLW T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-48 | 7 | 112 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-48 | 7 | 112 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102703 | 0.0 | BT102703.1 Picea glauca clone GQ02011_K24 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491008.2 | 5e-70 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 3e-65 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1S2XL73 | 1e-68 | A0A1S2XL73_CICAR; LOB domain-containing protein 12-like | ||||
STRING | XP_004491008.1 | 6e-69 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-62 | LBD family protein |
Publications ? help Back to Top | |||
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