PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00055994-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 166aa MW: 19505.3 Da PI: 9.2653

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00055994-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.8	7.1e-56	19	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv +yLk+kv+ +k+el +vi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g r+nrat++gyWkatgkd++ PSME_00055994-RA 19 LPPGFRFHPTDEELVAYYLKRKVHCRKIEL-DVIPEVDLYKFEPWDLPeKcFLPGRDLEWYFFSPRDRKYPNGLRTNRATEAGYWKATGKDRK 110 79**************************.9************5433344666******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++++g+kktLvfy+grap+g++t Wvmheyrl PSME_00055994-RA 111 IIF-HSRAIGMKKTLVFYTGRAPHGSRTGWVMHEYRL 146 9.999****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-62	13	152	IPR003441	NAC domain
PROSITE profile	PS51005	56.524	19	166	IPR003441	NAC domain
Pfam	PF02365	6.8E-31	20	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
GETVKPLYRD LSAMAPMSLP PGFRFHPTDE ELVAYYLKRK VHCRKIELDV IPEVDLYKFE 60 PWDLPEKCFL PGRDLEWYFF SPRDRKYPNG LRTNRATEAG YWKATGKDRK IIFHSRAIGM 120 KKTLVFYTGR APHGSRTGWV MHEYRLDENE CEASASLQVP RYSINQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-56	7	146	3	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027337522.1	2e-86	NAC domain-containing protein 86-like
Refseq	XP_028196865.1	2e-86	NAC domain-containing protein 45-like isoform X1
Swissprot	Q9FFI5	1e-78	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0B2QRC9	4e-85	A0A0B2QRC9_GLYSO; NAC domain-containing protein 45
STRING	GLYMA11G33210.1	1e-85	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	2e-82	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]